Episode 1 - Come Now

10 year old Genki Sakura wins the Monster Rancher championship. As his prize he receives the game on CD-Rom. As soon as he starts to play his new game, he is suddenly sucked into the world of the monsters, Where he meets up with Holly and Suzo, and then later unlocks Moochi, and they begin their journey to find the Pheniox and stop the evil Moo!

Episode 2 - I Am Mocchi

At the start of their new journey, the friends set out to overthrow Master Moo, but they soon find themselves up against Master Moo's evil soldiers. Genki thinks it's to dangerous for Moochi and wants him to stay with an eldary couple, but Moochi gets mad and refuses to do so. Later on Genki and Moochi make up and they all continue their journey.

Episode 3 - The Golem Forest

Genki and his friends meet a huge stone monster, Golem, who is the guardian of the lost (dead) monsters grave.The baddies come to steal the lost disks, Goldem, enraged at the destruction of the flowers attacks and kills them all, Golem then join the group.

Episode 4 - Eternal Worm

Genki and the others battle three evil sisters, and find themselves in possession of a mysterious stone, until a young boy, who is very curel to his Worm, steals it from them. The boy Alan wants to join Moo, but the Seed Sisters betray him. His mistreated worm gives it's life to protect Alan, and Alan learns that it is not right to abuse things...too late however, to save his monster, and friend.

Episode 5 - Tiger of the Wind

A stray monster bandit, steals the pendant stone from Holly. But the friends soon find out the Tiger isn't what they think. Tiger joins the group.

Episode 6 - Hare's Trick

Genki and his friends have run out of money, and enter a monster battle to try to win the prize money.However a smart and tricky Hare tricks Tiger out of first place, then tricks the group out of their 2nd place prize money! Hare in the end joins the group.

Episode 7 - The Courageous Seven

Genki and friends discover a beautiful city, beautiful until the Evil Haras floods the city in an attempt to destroy the group.

Episode 8 - After the Rain

Holly shares the story of how she met Suezo, and what happened to her family.

Episode 9 - The Iron Bird

Genki and his friends continue their journey to a huge, deep valley, where they wait to cross on an old airplane. But the pilot is really working for the bad guys!

Episode 10 - The Ruins' Secret

The group finds themselves in an area controlled by Pixie, where they set out to release some captive humans.
Episode 11 - Pixie's Defeat

It's up to Genki and Mocchi to free Holly and the others from a prison cave.

Episode 12 - Monol's Story

The group finally finds another mystery stone, so they return to the shrine to place it in the gate, and Monol is born.

Episode 13 - Moo Revealed

A floating castle appears in front of the friends -- it's Master Moo, and he manages to capture Holly.

Episode 14 - Holly's Rescue

The others head for the floating castle to try and rescue Holly from Master Moo.

15. A New Departure

Having escaped Moo's floating castle, the team consults the magic stone only to find it points across the ocean. Searching for a boat, they come to a deserted town where they are set upon by more of Moo's thugs, the Zuum Troops, led by Captain Zuum.

16. Great Battle At Sea

Under the sea, the Zillas have been mobilized to catch our team, who has dared to go against the mighty Master Moo.

17. Underground Adventure

Genki and the team discover a cave.

21. Mocchi's Cannon Explodes OR The Mocchi Cannon

Mocchi develops the "Mocchi Cannon" which defeats Gali.

22. Run Tiger, Run

Black worms attack the team and Holly is poisoned while saving Tiger. Tiger goes of to find the antidote to help Holly.

23. Don't Give Up Ducken!

While the team is trapped by the Mocks, Mocchi escapes and discovers a system of underground tunnels, where a lonely wild monster, Ducken lives.

24. Undine's Lake

In the night, the water spirit Undine lures Golem to the lake and by telling him how lonely she is, extracts a pledge of friendship and protection from him. In return she promises lots of fish for his friends in the morning.

25. Warriors Of The Ruins

When Genki and the team are about to be destroyed by Gray Wolf's Salamander Troops, they're saved by Centaur, Celious and Dragoon, warriors who chase the baddies away.

26. Melcarba

Melcarba, an ancient fighting robot, is reactivated. Melcarba drives off the Jaggernaut Troops, but then turns on the team.

27. Tiger's Battle With Destiny

Gray Wolf challenges Tiger to a one on one duel to settle things.

28. Colour Pandora, Guardian Of The Forest

As Genki and his friends walk through the forest, they fall into several traps. Genki and Hare chase the trap setter and discover it's not a bad one. It's Colour Pandora.

29. Farewell My Friend

Genki and friends cross the river with Jim, a man whom Genki begins to admire.

30. Baby Bossy

Genki and the gang resurrect an orangutan-like monster named Bossy.

31. Amusement Park Ruins

Genki and the gang battle the bad guys at an ancient amusement park.

32. Holly's Smile Is A Million Golds

Niton, a vendor appears in front of Genki and the others and tells them that he has the mystery stone of the Phoenix. Genki and his group say that they want the mystery stone and a trade is made for it with Holly's dagger.

33. Battle In The Meadow

Naga of the Big Bad Four gives orders to the Tainted Cat brothers and they appear in front of Genki and the others. Their special method of attack puts Genki and the others in danger and they split up to escape.

34. The Town That Disappeared

Holly and Mochhi find a diary in a ghost town that explains that the town was brought to disaster by Barjarl's invasion.

35. Battle With The Big Bad Four

Genki and the others head for the castle of Naga, last of the Big Bad Four.

36. Eve's Night

Eve a girl in a village is captured by Moo, and it it revealed to the group the Moo is Holly's father.

37. Holly's Happy Birthday

The gang plans a surprise party for Holly.

38. Evil General Durahan's Challenge

Moo, summons Evil General Durahan to destroy Genki and his friends. Durahan awakens End Bringer to attack Genki and his group.

39. Good-bye Baku

Genki meets, Baku, an monster who takes quite a myterious likeing to Genki. The group makes Genki leave Baku behind. Baku ends up saving Genki from the baddies, but it costs him his life.

40. Secret Of The Pendant Stone

Colt explains the history behind Monster Farm and tells them Pendant is the name of an ancient civilization that created Moo.

41. Tiger's Last Day

Tiger and Jagd Hound trick Lilim.

42. The Warriors From Outter Space

Genki and the others find a huge spaceship wreckage in a cave. Captain Astro becomes a lost mystery stone.

43. The Sand Assassin, Renocraft

Mocchi and the others meet up with an assassin, Renocraft, that Durahan sends after them.

44. A Scramble For The Pendant Stone

Moo has gotten his hands on his original body, but the merge isn't complete. They find out that they need the strength of the pendant stone.

45. Durahan Dies At Daybreak

Lilim and Durahan disappear into a burning battleship.

46. Of War And Hate

Having the Pendant stone in his possession, Moo absorbs its energy and completes his transformation. He appears before Genki and the group in his completed form.

47. Tears

Genki and his friends fight Moo and don't let on to the Phoenix's location but Moo captures Genki and things look lost.

48. Blue Skies

Monol tells Genki how to awaken the Phoenix and explains that Suezo, Tiger, Hare, Golem and Mocchi are the five monsters that have the Phoenix's soul in them. When they bond, the Phoenix will awaken. But Genki's courage is necessary.