BLASTN 2.0.14 [Jun-29-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 965200170-6712-9711

Query= 
         (56 letters)


Database: nt
           646,121 sequences; 2,124,006,809 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs


Taxonomy reports

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|L37747.1|HUMLAM11  Homo sapiens lamin B1 gene, exon 11, c...   111  2e-23
gb|AC007276.3|AC007276  Homo sapiens clone RP11-226O1, compl...    36  1.0
gb|AC006037.2|AC006037  Homo sapiens clone NH0263G22, comple...    36  1.0
emb|AL137070.9|AL137070  Human DNA sequence from clone RP11-...    36  1.0
gb|U63834.1|HSU63834  Human KIT protein and alternatively sp...    36  1.0
emb|X69311.1|HSKITPO11  H.sapiens KIT proto-oncogene for mas...    36  1.0
gb|L04143.1|HUMCKIT  Human c-kit gene                              36  1.0
emb|AL132640.2|CNS01DT5  Human chromosome 14 DNA sequence **...    34  4.1

Alignments
>gb|L37747.1|HUMLAM11 Homo sapiens lamin B1 gene, exon 11, complete cds
          Length = 958

 Score =  111 bits (56), Expect = 2e-23
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1  aaaagaaaaggttagaaagatgagagatgataaagggtccatttgaggttaggtaa 56
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaaagaaaaggttagaaagatgagagatgataaagggtccatttgaggttaggtaa 56



>gb|AC007276.3|AC007276 Homo sapiens clone RP11-226O1, complete sequence
          Length = 172573

 Score = 36.2 bits (18), Expect = 1.0
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 1     aaaagaaaaggttagaaagatgagag 26
             |||||||||||| ||| |||||||||
Sbjct: 11132 aaaagaaaaggtcagagagatgagag 11157



>gb|AC006037.2|AC006037 Homo sapiens clone NH0263G22, complete sequence
          Length = 108711

 Score = 36.2 bits (18), Expect = 1.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 2    aaagaaaaggttagaaag 19
            ||||||||||||||||||
Sbjct: 7238 aaagaaaaggttagaaag 7221



>emb|AL137070.9|AL137070 Human DNA sequence from clone RP11-251O17 on chromosome 9, complete
              sequence [Homo sapiens]
          Length = 170237

 Score = 36.2 bits (18), Expect = 1.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      aaaagaaaaggttagaaa 18
              ||||||||||||||||||
Sbjct: 132075 aaaagaaaaggttagaaa 132058



>gb|U63834.1|HSU63834 Human KIT protein and alternatively spliced KIT protein (KIT) gene,
             complete cds
          Length = 89603

 Score = 36.2 bits (18), Expect = 1.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     aagaaaaggttagaaaga 20
             ||||||||||||||||||
Sbjct: 77568 aagaaaaggttagaaaga 77551



>emb|X69311.1|HSKITPO11 H.sapiens KIT proto-oncogene for mast/stem cell growth factor
           receptor, exon 14
          Length = 534

 Score = 36.2 bits (18), Expect = 1.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 3   aagaaaaggttagaaaga 20
           ||||||||||||||||||
Sbjct: 205 aagaaaaggttagaaaga 188



>gb|L04143.1|HUMCKIT Human c-kit gene
          Length = 10976

 Score = 36.2 bits (18), Expect = 1.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 3    aagaaaaggttagaaaga 20
            ||||||||||||||||||
Sbjct: 6011 aagaaaaggttagaaaga 5994



>emb|AL132640.2|CNS01DT5 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-643G16 of
              library RPCI-11 from chromosome 14 of Homo sapiens (Human),
              complete sequence
          Length = 177675

 Score = 34.2 bits (17), Expect = 4.1
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 9      aggttagaaagatgaga 25
              |||||||||||||||||
Sbjct: 150265 aggttagaaagatgaga 150249




  Database: nt
    Posted date:  Jul 29, 2000  9:21 PM
  Number of letters in database: 2,124,006,809
  Number of sequences in database:  646,121
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73739
Number of Sequences: 646121
Number of extensions: 73739
Number of successful extensions: 73732
Number of sequences better than 10.0: 52
length of query: 56
length of database: 2,124,006,809
effective HSP length: 18
effective length of query: 38
effective length of database: 2,112,376,631
effective search space: 80270311978
effective search space used: 80270311978
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)