Score E
Sequences producing significant alignments: (bits) Value
gb|L22754.1|HUMBGLOBC Human beta-globin cluster gene, enhan... 139 1e-31
gb|U01317.1|HUMHBB Human beta globin region on chromosome 11 139 1e-31
gb|AC008068.4|AC008068 Homo sapiens clone RP11-334F17, comp... 36 1.4
gb|AE001095.1|AE001095 Archaeoglobus fulgidus section 12 of... 36 1.4
emb|AL035588.21|HS696P19 Human DNA sequence from clone 696P... 36 1.4
gb|AC004554.1|AC004554 Homo sapiens Xp22 BAC GSHB-590J6 (Ge... 34 5.6
gb|AC006456.2|AC006456 Homo sapiens PAC clone RP5-969D4 fro... 34 5.6
gb|AF178573.1|AF178573 White spot syndrome virus of penaeid... 34 5.6
gb|AC007628.3|AC007628 Genomic sequence of Homo sapiens clo... 34 5.6
emb|AL121873.15|HSB362E11 Human DNA sequence from clone RP1... 34 5.6
Alignments
>gb|L22754.1|HUMBGLOBC Human beta-globin cluster gene, enhancers with repeat region
Length = 2999
Score = 139 bits (70), Expect = 1e-31
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gaattctaatctccctctcaaccctacagtcacccatttggtatattaaagatgtgttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2688 gaattctaatctccctctcaaccctacagtcacccatttggtatattaaagatgtgttgt 2747
Query: 61 ctactgtcta 70
||||||||||
Sbjct: 2748 ctactgtcta 2757
>gb|U01317.1|HUMHBB Human beta globin region on chromosome 11
Length = 73308
Score = 139 bits (70), Expect = 1e-31
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gaattctaatctccctctcaaccctacagtcacccatttggtatattaaagatgtgttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaattctaatctccctctcaaccctacagtcacccatttggtatattaaagatgtgttgt 60
Query: 61 ctactgtcta 70
||||||||||
Sbjct: 61 ctactgtcta 70
>gb|AC008068.4|AC008068 Homo sapiens clone RP11-334F17, complete sequence
Length = 154036
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 45 attaaagatgtgttgtct 62
||||||||||||||||||
Sbjct: 49740 attaaagatgtgttgtct 49723
>gb|AE001095.1|AE001095 Archaeoglobus fulgidus section 12 of 172 of the complete genome
Length = 10592
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 6 ctaatctccctctcaacc 23
||||||||||||||||||
Sbjct: 6234 ctaatctccctctcaacc 6217
>emb|AL035588.21|HS696P19 Human DNA sequence from clone 696P19 on chromosome 6p12.3-21.2.
Contains the gene for TFEB, an NPM1 (Nucleophosmin,
Numatrin) pseudogene and the MDFI gene for MyoD family
inhibitor (myogenic repressor I-MF). Contains ESTs, STSs,
GSSs and two putative C>
Length = 110665
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 33 cccatttggtatattaaa 50
||||||||||||||||||
Sbjct: 95717 cccatttggtatattaaa 95700
>gb|AC004554.1|AC004554 Homo sapiens Xp22 BAC GSHB-590J6 (Genome Systems Human BAC library)
complete sequence
Length = 195142
Score = 34.2 bits (17), Expect = 5.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 37 tttggtatattaaagat 53
|||||||||||||||||
Sbjct: 95915 tttggtatattaaagat 95931
>gb|AC006456.2|AC006456 Homo sapiens PAC clone RP5-969D4 from 7q33-q35, complete sequence
Length = 75609
Score = 34.2 bits (17), Expect = 5.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 25 tacagtcacccatttggtata 45
||||||||| |||||||||||
Sbjct: 63943 tacagtcactcatttggtata 63963
>gb|AF178573.1|AF178573 White spot syndrome virus of penaeid shrimp, genomic sequence
Length = 2833
Score = 34.2 bits (17), Expect = 5.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 39 tggtatattaaagatgtgttg 59
|||||||||||| ||||||||
Sbjct: 1396 tggtatattaaatatgtgttg 1416
>gb|AC007628.3|AC007628 Genomic sequence of Homo sapiens clone N0576M10 from chromosome 18,
complete sequence
Length = 140356
Score = 34.2 bits (17), Expect = 5.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2 aattctaatctccctct 18
|||||||||||||||||
Sbjct: 81447 aattctaatctccctct 81431
>emb|AL121873.15|HSB362E11 Human DNA sequence from clone RP13-362E11 on chromosome X. Contains a
pseudogene similar to mouse GEG-154 and mosquito MRRG, a
pseudogene similar to human MMS2 and chicken CROC-1B,
ESTs, STSs and GSSs, complete sequence [Homo sapiens]
Length = 212280
Score = 34.2 bits (17), Expect = 5.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 37 tttggtatattaaagat 53
|||||||||||||||||
Sbjct: 63628 tttggtatattaaagat 63612
Database: nt
Posted date: Aug 5, 2000 9:23 PM
Number of letters in database: -2,133,335,288
Number of sequences in database: 651,732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71169
Number of Sequences: 651732
Number of extensions: 71169
Number of successful extensions: 16960
Number of sequences better than 10.0: 16
length of query: 70
length of database: 2,161,632,008
effective HSP length: 19
effective length of query: 51
effective length of database: 2,149,249,100
effective search space: 109611704100
effective search space used: 109611704100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
