BLASTN 2.0.14 [Jun-29-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 965583569-2287-16934

Query= 
         (12 letters)


Database: nt
           651,732 sequences; 2,161,632,008 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs


Taxonomy reports

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AF043681.1|AF043681  Rotavirus G194C outer capsid protein...    24    106
gb|AF043677.1|AF043677  Rotavirus G192A outer capsid protein...    24    106
gb|AF254141.1|AF254141  Human rotavirus group A isolate CIT-...    22    418
gb|AF254137.1|AF254137  Human rotavirus group A isolate CIT-...    22    418
gb|U88717.1|HRU88717  Human rotavirus glycoprotein VP7 mRNA,...    22    418
gb|AF043682.1|AF043682  Rotavirus G195B outer capsid protein...    22    418
gb|AF043680.1|AF043680  Rotavirus G194B outer capsid protein...    22    418
gb|S83903.1|S83903  VP7=basic neutralizing antigen [human ro...    22    418
emb|Y18786.1|HRY18786  Human rotavirus genomic RNA for VP7 p...    22    418
gb|M21843.1|ROHVP7A  Human rotavirus gene 9 encoding viral g...    22    418

Alignments
>gb|AF043681.1|AF043681 Rotavirus G194C outer capsid protein (VP7) mRNA, complete cds
          Length = 1062

 Score = 24.3 bits (12), Expect =   106
 Identities = 12/12 (100%)
 Strand = Plus / Plus

                      
Query: 1  gaattctaatct 12
          ||||||||||||
Sbjct: 71 gaattctaatct 82



>gb|AF043677.1|AF043677 Rotavirus G192A outer capsid protein (VP7) mRNA, complete cds
          Length = 1062

 Score = 24.3 bits (12), Expect =   106
 Identities = 12/12 (100%)
 Strand = Plus / Plus

                      
Query: 1  gaattctaatct 12
          ||||||||||||
Sbjct: 71 gaattctaatct 82



>gb|AF254141.1|AF254141 Human rotavirus group A isolate CIT-313RV segment 9 viral protein
          7 (VP7) mRNA, complete cds
          Length = 1062

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 72 aattctaatct 82



>gb|AF254137.1|AF254137 Human rotavirus group A isolate CIT-6RV segment 9 viral protein 7
          (VP7) mRNA, complete cds
          Length = 1062

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 72 aattctaatct 82



>gb|U88717.1|HRU88717 Human rotavirus glycoprotein VP7 mRNA, complete cds
          Length = 1062

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 72 aattctaatct 82



>gb|AF043682.1|AF043682 Rotavirus G195B outer capsid protein (VP7) mRNA, complete cds
          Length = 1062

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 72 aattctaatct 82



>gb|AF043680.1|AF043680 Rotavirus G194B outer capsid protein (VP7) mRNA, complete cds
          Length = 1062

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 72 aattctaatct 82



>gb|S83903.1|S83903 VP7=basic neutralizing antigen [human rotavirus, isolate 1407,
          mRNA, 1014 nt]
          Length = 1014

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 24 aattctaatct 34



>emb|Y18786.1|HRY18786 Human rotavirus genomic RNA for VP7 protein
          Length = 1060

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 70 aattctaatct 80



>gb|M21843.1|ROHVP7A Human rotavirus gene 9 encoding viral glycoprotein VP7, complete
          cds
          Length = 1059

 Score = 22.3 bits (11), Expect =   418
 Identities = 11/11 (100%)
 Strand = Plus / Plus

                     
Query: 2  aattctaatct 12
          |||||||||||
Sbjct: 72 aattctaatct 82




  Database: nt
    Posted date:  Aug 5, 2000  9:23 PM
  Number of letters in database: -2,133,335,288
  Number of sequences in database:  651,732
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2751
Number of Sequences: 651732
Number of extensions: 2751
Number of successful extensions: 2751
Number of sequences better than 1000.0: 2499
length of query: 12
length of database: 2,161,632,008
effective HSP length: 11
effective length of query: 1
effective length of database: 2,154,462,956
effective search space: 2154462956
effective search space used: 2154462956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 11 (22.3 bits)