Results of Search:
Program: fasta3_t
Database: EHUM
Title: Sequence
SeqLen:
24
FASTA searches a protein or DNA sequence data bank
version 3.2t09 December 7, 1999
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
/net/nfs0/vol1/production/w3nobody/tmp/262525.2545: 24 nt
>Sequence
vs EMBL Human library
searching /ebi/services/idata/fastadb/em_hum library
opt E()
< 20 89 0:=
22 28 0:= one = represents 170 library sequences
24 119 0:=
26 208 2:*=
28 366 27:*==
30 677 162:*===
32 1459 627:===*=====
34 2332 1702:==========*===
36 3521 3495:====================*
38 5117 5775:=============================== *
40 7428 8056:============================================ *
42 8862 9848:===================================================== *
44 9256 10863:======================================================= *
46 10186 11064:===========================================================*
48 9983 10592:===========================================================*
50 9617 9666:========================================================*
52 8705 8498:=================================================*==
54 7292 7259:==========================================*
56 7093 6063:===================================*======
58 5492 4978:=============================*===
60 4504 4032:=======================*===
62 3724 3233:===================*==
64 2636 2571:===============*
66 2138 2032:===========*=
68 1816 1598:=========*=
70 1264 1253:=======*
72 952 979:=====*
74 708 763:====*
76 516 594:===*
78 421 462:==*
80 323 358:==*
82 223 274:=*
84 200 217:=*
86 135 168:*
88 116 130:* inset = represents 2 library sequences
90 98 101:*
92 53 78:* :=========================== *
94 34 60:* :================= *
96 33 47:* :================= *
98 28 36:* :============== *
100 14 28:* :======= *
102 14 22:* :======= *
104 6 17:* :=== *
106 5 13:* :=== *
108 5 10:* :=== *
110 7 8:* :===*
112 3 6:* :==*
114 3 5:* :==*
116 2 4:* :=*
118 2 3:* :=*
>120 3 2:* :*=
824675648 residues in 113725 sequences
statistics extrapolated from 50000 to 117785 sequences
Expectation_n fit: rho(ln(x))= 4.4212+/-0.000225; mu= 11.0369+/- 0.017;
mean_var=31.7879+/- 5.255, 0's: 1 Z-trim: 26 B-trim: 1833 in 3/84
Kolmogorov-Smirnov statistic: 0.0231 (N=29) at 50
FASTA (3.28 September 1999) function [optimized, +5/-4 matrix (5:-4)] ktup: 1
join: 70, opt: 55, gap-pen: -16/ -4, width: 16
Scan time: 832.400
The best scores are: initn init1 opt z-sc E(117785)
EM_HUM:HSB1 L22754 HUMAN BETA-GLOBIN (2999) [f] 120 120 120 180.5 0.0061
EM_HUM:HSHBB U01317 HUMAN BETA GLOBIN (73308) [f] 120 120 120 155.4 0.0063
>>EM_HUM:HSB1 L22754 HUMAN BETA-GLOBIN CLUSTER GENE, ENH (2999 nt)
initn: 120 init1: 120 opt: 120 Z-score: 180.5 expect() 0.0061
100.000% identity in 24 nt overlap (1-24:2688-2711)
10 20
Sequen GAATTCTAATCTCCCTCTCAACCC
::::::::::::::::::::::::
EM_HUM TGATTTAAGCCTTTTTGGTCATAAAACATTGAATTCTAATCTCCCTCTCAACCCTACAGT
2660 2670 2680 2690 2700 2710
EM_HUM CACCCATTTGGTATATTAAAGATGTGTTGTCTACTGTCTAGTATCCCTCAAGCAGTGTCA
2720 2730 2740 2750 2760 2770
>>EM_HUM:HSHBB U01317 HUMAN BETA GLOBIN REGION ON CHROMO (73308 nt)
initn: 120 init1: 120 opt: 120 Z-score: 155.4 expect() 0.0063
100.000% identity in 24 nt overlap (1-24:1-24)
10 20
Sequen GAATTCTAATCTCCCTCTCAACCC
::::::::::::::::::::::::
EM_HUM GAATTCTAATCTCCCTCTCAACCCTACAGTCACCCATTTGGTATATTAAAGATGTGTTGT
10 20 30 40 50 60
24 residues in 1 query sequences
824675648 residues in 113725 library sequences
Tcomplib (4 proc)[version 3.2t09 December 7, 1999]
start: Sun Aug 6 19:29:32 2000 done: Sun Aug 6 19:33:31 2000
Scan time: 832.400 Display time: 0.080
Function used was FASTA