| # | Episode Name | Description | Quotes | Tag Line | Credits | Air Date | Rating |
| 1 | "The Blessing Way" | The First Part of the Third Season Première | THE TRUTH IS OUT THERE | W: Chris Carter D: R. W. Goodwin |
1995-09-22 (Fri.) | TTTT | |
| 2 | "Paper Clip" | The Second Part of the Third Season Première | " | W: Chris Carter D: Rob Bowman |
1995-09-29 (Fri.) | TTTT | |
| 3 | "D. P. O." | The Lightning Episode | " | W: Howard Gordon D: Kim Manners |
1995-10-06 (Fri.) | TTT | |
| 4 | "Clyde Bruckman's Final Repose" | The Psychic Episode | "Something told me, Scully, something is telling me this guy's for real." "Oh, so now you're psychic?" |
" | W: Darin Morgan D: David Nutter |
1995-10-13 (Fri.) | TTT |
| 5 | "The List" | The Episode with the Five Names | "Imagine if you could come back
and take out five people who had caused you to suffer. Who would they
be?" "I only get five?" |
" | W: Chris Carter D: Chris Carter |
1995-10-20 (Fri.) | TTT |
| 6 | "2Shy" | The Fat-Sucking Vampire Episode | " | W: Jeff Vlaming D: David Nutter |
1995-11-03 (Fri.) | TT | |
| 7 | "The Walk" | The Astral Projection Episode | " | W: John Shiban D: Rob Bowman |
1995-11-10 (Fri.) | TT | |
| 8 | "Oubliette" | " | W: Charles Grant Craig D: Kim Manners |
1995-11-17 (Fri.) | TT | ||
| 9 | "Nisei" | The First Episode with the Train | " | W: Chris Carter, Howard Gordon, Frank Spotnitz D: David Nutter |
1995-11-24 (Fri.) | TTT | |
| 10 | "731" | The Second Episode with the Train | APOLOGY IS POLICY | W: Frank Spotnitz D: Rob Bowman |
1995-12-01 (Fri.) | TTT | |
| 11 | "Revelations" | The Stigmata Episode | THE TRUTH IS OUT THERE | W: Kim Newton D: David Nutter |
1995-12-15 (Fri.) | TTT | |
| 12 | "War Of The Coprophages" | The Cockroach Episode | "It appears that cockroaches are mortally attacking people." "I'm not going to ask you if you just said what I think you just said because I know it's what you just said." |
" | W: Darin Morgan D: Kim Manners |
1996-01-05 (Fri.) | TTTT |
| 13 | "Syzygy" | The Episode with the Hornèd Beast | "If it's no bother, if it's not
too big a deal, maybe you can get me a few photographs of that thing which
bears absolutely no resemblance to a hornèd beast." "Sure, fine, whatever." |
" | W: Chris Carter D: Rob Bowman |
1996-01-26 (Fri.) | TTTT |
| 14 | "Grotesque" | The Gargoyles Episode | " | W: Howard Gordon D: Kim Manners |
1996-02-02 (Fri.) | TTTT | |
| 15 | "Piper Maru" | The First Episode with the Black Oil | " | W: Chris Carter, Frank Spotnitz D: Rob Bowman |
1996-02-09 (Fri.) | TTTT | |
| 16 | "Apocrypha" | The Second Episode with the Black Oil | " | W: Chris Carter, Frank Spotnitz D: Kim Manners |
1996-02-16 (Fri.) | TTTT | |
| 17 | "Pusher" | The Mind-Control Episode | "Modell psyched the guy out!
He put the whammy on him!" "Please explain to me the scientific nature of 'the Whammy'." |
" | W: Vince Gilligan D: Rob Bowman |
1996-02-23 (Fri.) | TTT |
| 18 | "Teso dos Bichos" | The Episode with the Cats | " | W: John Shiban D: Kim Manners |
1996-03-08 (Fri.) | TT | |
| 19 | "Hell Money" | The Episode with the Chinese People | " | W: Jeff Vlaming D: Tucker Gates |
1996-03-29 (Fri.) | TT | |
| 20 | "Jose Chung's 'From Outer Space'" | The Episode with the Novelist | " | W: Darin Morgan D: Rob Bowman |
1996-04-12 (Fri.) | TTT | |
| 21 | "Avatar" | The Episode with Skinner | " | Story: Howard Gordon, David Duchovny Script: Howard Gordon D: Jim Charleston |
1996-04-26 (Fri.) | TT | |
| 22 | "Quagmire" | The Lake Monster Episode | " | W: Kim Newton D: Kim Manners |
1996-05-03 (Fri.) | TTTTT | |
| 23 | "Wetwired" | The T.V. Episode | " | W: Mat Beck D: Rob Bowman |
1996-05-10 (Fri.) | TTT | |
| 24 | "Talitha Cumi" | The Third Season Finale | " | Story: Chris Carter, David Duchovny Script: Chris Carter D: R. W. Goodwin |
1996-05-17 (Fri.) | TT |