Gene Roddenberry's Andromeda: Transcripts http://home.neo.rr.com/nikojen/transcript/transcripts.htm
TWIZ TV only have the transcript for Andromeda pilot episode.
Andromeda Series Premiere "Under The Night" http://www.twiztv.com/scripts/pilots/andromedapilot.htm
This site also have the transcripts for the pilots of over tv shows including Hercules", and "Xena Warrior Princess".
Andromeda Starship Logs homepage